3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09701

Details:

PFam ID : PF09701

PFam Domain Description : CRISPR-associated protein (Cas_Cmr5)

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 92

Average sequence length: 120.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09701	D9TMI8_THETC_9_198	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09701	D0LTH7_HALO1_7_161	100

Sequence based PCA Plot of the family - PF09701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=110 Length=8
Motif4 Start=181 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay