Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09699
Details:

PFam ID : PF09699

PFam Domain Description : Doubled CXXCH motif (Paired_CXXCH_1)

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 878

Average sequence length: 42.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF09699Q39Y50_GEOMG_2128_2158No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF09699D5XD19_THEPJ_2383_243399.7
Sequence based PCA Plot of the family - PF09699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay