3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09698

Details:

PFam ID : PF09698

PFam Domain Description : Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 279

Average sequence length: 36.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09698	Q39Y50_GEOMG_2128_2158	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09698	B5EHG3_GEOBB_437_468	100

Sequence based PCA Plot of the family - PF09698 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay