3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09696

Details:

PFam ID : PF09696

PFam Domain Description : Ctf8

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 136

Average sequence length: 115.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09696	B6IH21_CAEBR_38_103	82.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09696	E3K5I0_PUCGT_18_159	100

Sequence based PCA Plot of the family - PF09696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=17
Motif2 Start=80 Length=8
Motif3 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay