3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09692

Details:

PFam ID : PF09692

PFam Domain Description : Argonaute siRNA chaperone (ARC) complex subunit Arb1

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 52

Average sequence length: 277.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09692	B2WG82_PYRTR_221_409	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09692	A4QQE2_MAGO7_168_584	100

Sequence based PCA Plot of the family - PF09692 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=68 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay