3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09685

Details:

PFam ID : PF09685

PFam Domain Description : Tic20-like protein

Number of Sequence in 50% Dataset : 234

Number of Sequence in Full Dataset : 558

Average sequence length: 107.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09685	A9D5B2_9GAMM_1_43	51.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09685	D5A1L9_SPIPL_19_98	91.7

Sequence based PCA Plot of the family - PF09685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=33
Motif2 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay