3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09683

Details:

PFam ID : PF09683

PFam Domain Description : Bacteriocin (Lactococcin_972)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 56

Average sequence length: 61.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09683	E0Q3J7_9STRE_16_60	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09683	E3DUG8_BACA1_54_125	96.3

Sequence based PCA Plot of the family - PF09683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=28
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay