3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09678

Details:

PFam ID : PF09678

PFam Domain Description : Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 394

Average sequence length: 231.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09678	E6QFD0_9ZZZZ_1_127	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09678	E6TXY3_BACCJ_26_286	100

Sequence based PCA Plot of the family - PF09678 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=144 Length=8
Motif2 Start=63 Length=11
Motif3 Start=208 Length=11
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay