3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09677

Details:

PFam ID : PF09677

PFam Domain Description : Type-F conjugative transfer system protein (TrbI_Ftype)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 50

Average sequence length: 105.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09677	D2TZZ6_9ENTR_1_73	54.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09677	Q8D697_VIBVU_1_111	100

Sequence based PCA Plot of the family - PF09677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay