3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09673

Details:

PFam ID : PF09673

PFam Domain Description : Type-F conjugative transfer system pilin assembly protein

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 104

Average sequence length: 110.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09673	B3EB54_GEOLS_168_301	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09673	B3EB54_GEOLS_168_301	100

Sequence based PCA Plot of the family - PF09673 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=17
Motif2 Start=76 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay