3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09670

Details:

PFam ID : PF09670

PFam Domain Description : CRISPR-associated protein (Cas_Cas02710)

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 85

Average sequence length: 260.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09670	A9WJV1_CHLAA_116_238	87.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09670	E6QB03_9ZZZZ_70_199	100

Sequence based PCA Plot of the family - PF09670 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=189 Length=8
Motif3 Start=75 Length=8
Motif4 Start=393 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay