3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09665

Details:

PFam ID : PF09665

PFam Domain Description : Type II restriction endonuclease (RE_Alw26IDE)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 10

Average sequence length: 446

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09665	B6G8M4_9ACTN_1_524	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09665	B6G8M4_9ACTN_1_524	100

Sequence based PCA Plot of the family - PF09665 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=8
Motif2 Start=271 Length=8
Motif3 Start=221 Length=8
Motif4 Start=189 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay