3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09663

Details:

PFam ID : PF09663

PFam Domain Description : Amidohydrolase ring-opening protein (Amido_AtzD_TrzD)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 32

Average sequence length: 338.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09663	C1E9U0_MICSR_8_396	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09663	C1E9U0_MICSR_8_396	100

Sequence based PCA Plot of the family - PF09663 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=88 Length=8
Motif2 Start=171 Length=8
Motif3 Start=34 Length=14
Motif4 Start=372 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay