3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09655

Details:

PFam ID : PF09655

PFam Domain Description : Conserved nitrate reductase-associated protein (Nitr_red_assoc)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 55

Average sequence length: 141.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09655	A6SY40_JANMA_4_151	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09655	A6SY40_JANMA_4_151	100

Sequence based PCA Plot of the family - PF09655 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=124 Length=20
Motif2 Start=13 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay