3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09651

Details:

PFam ID : PF09651

PFam Domain Description : CRISPR-associated protein (Cas_APE2256)

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 86

Average sequence length: 135.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09651	D4Y608_BACTR_1_53	96

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09651	A1ZP53_9BACT_70_221	100

Sequence based PCA Plot of the family - PF09651 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=23 Length=8
Motif3 Start=3 Length=8
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay