3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09648

Details:

PFam ID : PF09648

PFam Domain Description : YycI protein

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 136

Average sequence length: 217.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09648	E4SCC7_CALK2_30_237	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09648	D4QRG3_ENTFC_31_273	99.2

Sequence based PCA Plot of the family - PF09648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=231 Length=8
Motif4 Start=197 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay