3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09643

Details:

PFam ID : PF09643

PFam Domain Description : YopX protein

Number of Sequence in 50% Dataset : 188

Number of Sequence in Full Dataset : 328

Average sequence length: 122.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09643	D0AIV7_ENTFC_1_74	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09643	C3WB79_FUSMR_5_186	99.6

Sequence based PCA Plot of the family - PF09643 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=8
Motif4 Start=169 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay