3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09640

Details:

PFam ID : PF09640

PFam Domain Description : Domain of unknown function (DUF2027)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 43

Average sequence length: 155.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09640	E0NQN4_9BACT_125_215	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09640	C2MCF7_9PORP_113_278	100

Sequence based PCA Plot of the family - PF09640 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=51 Length=8
Motif3 Start=104 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay