3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09639

Details:

PFam ID : PF09639

PFam Domain Description : YjcQ protein

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 36

Average sequence length: 89.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09639	C0WWS3_LACFE_10_75	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09639	C7Y5Z9_9LACO_10_109	100

Sequence based PCA Plot of the family - PF09639 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=37 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay