3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09630

Details:

PFam ID : PF09630

PFam Domain Description : Domain of unknown function (DUF2024)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 20

Average sequence length: 77.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09630	C7PG29_CHIPD_1_82	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09630	C7PG29_CHIPD_1_82	100

Sequence based PCA Plot of the family - PF09630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=3 Length=8
Motif3 Start=15 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay