3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09626

Details:

PFam ID : PF09626

PFam Domain Description : Dihaem cytochrome c

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 114

Average sequence length: 104.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09626	A0YGU2_9GAMM_71_193	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09626	A0YGU2_9GAMM_71_193	100

Sequence based PCA Plot of the family - PF09626 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=20
Motif2 Start=47 Length=8
Motif3 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay