3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09623

Details:

PFam ID : PF09623

PFam Domain Description : CRISPR-associated protein NE0113 (Cas_NE0113)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 61

Average sequence length: 195.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09623	B0VHB3_CLOAI_38_190	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09623	Q973I0_SULTO_2_158	100

Sequence based PCA Plot of the family - PF09623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=174 Length=8
Motif4 Start=101 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay