3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09619

Details:

PFam ID : PF09619

PFam Domain Description : Type III secretion system lipoprotein chaperone (YscW)

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 139

Average sequence length: 108.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09619	E1V763_HALED_48_173	77.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09619	E1V763_HALED_48_173	91.3

Sequence based PCA Plot of the family - PF09619 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay