3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09618

Details:

PFam ID : PF09618

PFam Domain Description : CRISPR-associated protein (Cas_Csy4)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 91

Average sequence length: 176.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09618	D5BZR6_NITHN_5_199	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09618	A1RK19_SHESW_4_222	100

Sequence based PCA Plot of the family - PF09618 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=211 Length=8
Motif3 Start=41 Length=8
Motif4 Start=200 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay