3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09617

Details:

PFam ID : PF09617

PFam Domain Description : CRISPR-associated protein GSU0053 (Cas_GSU0053)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 34

Average sequence length: 170.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09617	D9W4Z7_9ACTO_19_199	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09617	D9W4Z7_9ACTO_19_199	100

Sequence based PCA Plot of the family - PF09617 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay