3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09615

Details:

PFam ID : PF09615

PFam Domain Description : CRISPR-associated protein (Cas_Csy3)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 75

Average sequence length: 318.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09615	D6SNR7_9DELT_5_354	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09615	D6SNR7_9DELT_5_354	100

Sequence based PCA Plot of the family - PF09615 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=277 Length=8
Motif3 Start=336 Length=14
Motif4 Start=114 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay