3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09614

Details:

PFam ID : PF09614

PFam Domain Description : CRISPR-associated protein (Cas_Csy2)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 82

Average sequence length: 258.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09614	D6SNR6_9DELT_5_190	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09614	C4XPX2_DESMR_11_321	100

Sequence based PCA Plot of the family - PF09614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay