3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09612

Details:

PFam ID : PF09612

PFam Domain Description : Bacterial protein of unknown function (HtrL_YibB)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 34

Average sequence length: 205.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09612	A7SMD6_NEMVE_190_367	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09612	B2PV97_PROST_1_274	100

Sequence based PCA Plot of the family - PF09612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8
Motif4 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay