3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09610

Details:

PFam ID : PF09610

PFam Domain Description : Mycoplasma virulence signal region (Myco_arth_vir_N)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 13

Average sequence length: 30.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09610	D0LSW6_HALO1_1_493	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09610	Q6MSY8_MYCMS_1_33	91.6

Sequence based PCA Plot of the family - PF09610 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay