3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09607

Details:

PFam ID : PF09607

PFam Domain Description : Brinker DNA-binding domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 24

Average sequence length: 51.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09607	Q4SUS1_TETNG_746_803	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09607	B7QJQ6_IXOSC_11_63	95.6

Sequence based PCA Plot of the family - PF09607 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay