3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09606

Details:

PFam ID : PF09606

PFam Domain Description : ARC105 or Med15 subunit of Mediator complex non-fungal

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 95

Average sequence length: 288.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09606	Q4SUS1_TETNG_746_803	40.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09606	D0WHM1_9ACTN_20_211	100

Sequence based PCA Plot of the family - PF09606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=78 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay