3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09605

Details:

PFam ID : PF09605

PFam Domain Description : Hypothetical bacterial integral membrane protein (Trep_Strep)

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 286

Average sequence length: 178.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09605	E9S0N9_TREDE_7_105	78.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09605	D0WHM1_9ACTN_20_211	100

Sequence based PCA Plot of the family - PF09605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay