3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09603

Details:

PFam ID : PF09603

PFam Domain Description : Fic/DOC family

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 206

Average sequence length: 172.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09603	D7JY77_9BACE_457_621	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09603	D0TCI2_9BACE_420_667	100

Sequence based PCA Plot of the family - PF09603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=3 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay