3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09600

Details:

PFam ID : PF09600

PFam Domain Description : Cyd operon protein YbgE (Cyd_oper_YbgE)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 87

Average sequence length: 79.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09600	A4SJ30_AERS4_18_102	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09600	A4SJ30_AERS4_18_102	100

Sequence based PCA Plot of the family - PF09600 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay