3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09593

Details:

PFam ID : PF09593

PFam Domain Description : Beta-satellite pathogenicity beta C1 protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 116

Average sequence length: 114.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09593	A5H1F9_9VIRU_2_120	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09593	A5H1F9_9VIRU_2_120	100

Sequence based PCA Plot of the family - PF09593 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=9 Length=8
Motif2 Start=58 Length=8
Motif3 Start=86 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay