3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09590

Details:

PFam ID : PF09590

PFam Domain Description : Lentivirus surface glycoprotein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 191

Average sequence length: 236.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09590	Q86683_9RETR_6_110	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09590	Q64F58_9RETR_29_612	100

Sequence based PCA Plot of the family - PF09590 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=187 Length=8
Motif3 Start=370 Length=8
Motif4 Start=175 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay