3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09588

Details:

PFam ID : PF09588

PFam Domain Description : YqaJ-like viral recombinase domain

Number of Sequence in 50% Dataset : 196

Number of Sequence in Full Dataset : 517

Average sequence length: 138.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09588	E4MIC3_9FIRM_147_272	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09588	C1EHL0_MICSR_99_302	98.8

Sequence based PCA Plot of the family - PF09588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=71 Length=8
Motif3 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay