3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09587

Details:

PFam ID : PF09587

PFam Domain Description : Bacterial capsule synthesis protein PGA_cap

Number of Sequence in 50% Dataset : 287

Number of Sequence in Full Dataset : 757

Average sequence length: 240.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09587	E4MIC3_9FIRM_147_272	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09587	E4MIC3_9FIRM_147_272	100

Sequence based PCA Plot of the family - PF09587 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=11
Motif2 Start=4 Length=8
Motif3 Start=338 Length=11
Motif4 Start=147 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay