3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09586

Details:

PFam ID : PF09586

PFam Domain Description : Bacterial membrane protein YfhO

Number of Sequence in 50% Dataset : 296

Number of Sequence in Full Dataset : 566

Average sequence length: 484.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09586	B5Y6Q8_COPPD_4_117	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09586	Q1PVC8_9BACT_28_692	99.8

Sequence based PCA Plot of the family - PF09586 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=846 Length=8
Motif3 Start=129 Length=8
Motif4 Start=811 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay