3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09585

Details:

PFam ID : PF09585

PFam Domain Description : Conserved hypothetical protein (Lin0512_fam)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 105

Average sequence length: 106.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09585	B5Y6Q8_COPPD_4_117	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09585	B7FYS2_PHATC_64_177	100

Sequence based PCA Plot of the family - PF09585 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay