3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09565

Details:

PFam ID : PF09565

PFam Domain Description : NgoFVII restriction endonuclease

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 42

Average sequence length: 238.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09565	Q70CB6_STRTR_1_240	70.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09565	F0HUX5_LACDL_24_347	100

Sequence based PCA Plot of the family - PF09565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=71 Length=8
Motif4 Start=233 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay