3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09563

Details:

PFam ID : PF09563

PFam Domain Description : LlaJI restriction endonuclease

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 58

Average sequence length: 340.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09563	C2URJ4_BACCE_76_408	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09563	A7VF18_9CLOT_87_498	100

Sequence based PCA Plot of the family - PF09563 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=8
Motif2 Start=227 Length=8
Motif3 Start=99 Length=8
Motif4 Start=279 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay