3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09561

Details:

PFam ID : PF09561

PFam Domain Description : HpaII restriction endonuclease

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 38

Average sequence length: 297.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09561	C3WNY2_9FUSO_9_127	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09561	C0EN25_NEIFL_7_375	100

Sequence based PCA Plot of the family - PF09561 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=360 Length=8
Motif2 Start=315 Length=8
Motif3 Start=292 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay