3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09553

Details:

PFam ID : PF09553

PFam Domain Description : Eco47II restriction endonuclease

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 30

Average sequence length: 182.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09553	C0B3B4_9ENTR_4_72	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09553	Q5ZW50_LEGPH_18_230	100

Sequence based PCA Plot of the family - PF09553 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=27
Motif2 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay