3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09550

Details:

PFam ID : PF09550

PFam Domain Description : Conserved hypothetical phage protein (DUF2376)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 80

Average sequence length: 42.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09550	E9Y1S2_ECOLX_76_295	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09550	A3WEX1_9SPHN_24_70	100

Sequence based PCA Plot of the family - PF09550 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay