3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09534

Details:

PFam ID : PF09534

PFam Domain Description : Tryptophan-associated transmembrane protein (Trp_oprn_chp)

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 122

Average sequence length: 173.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09534	Q6AF70_LEIXX_10_231	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09534	Q6AF70_LEIXX_10_231	100

Sequence based PCA Plot of the family - PF09534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=64 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay