3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09531

Details:

PFam ID : PF09531

PFam Domain Description : Nucleoporin protein Ndc1-Nup

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 148

Average sequence length: 444.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09531	B4LK25_DROVI_407_543	67.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09531	A8PNL4_BRUMA_39_391	99.3

Sequence based PCA Plot of the family - PF09531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=139 Length=8
Motif4 Start=476 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay