3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09529

Details:

PFam ID : PF09529

PFam Domain Description : Integral membrane protein (intg_mem_TP0381)

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 192

Average sequence length: 221.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09529	A6NRT9_9BACE_1_224	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09529	E0IE36_9BACL_1_235	100

Sequence based PCA Plot of the family - PF09529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=177 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay