3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09520

Details:

PFam ID : PF09520

PFam Domain Description : MjaII restriction endonuclease

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 42

Average sequence length: 207.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09520	B0VFF9_CLOAI_1_271	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09520	D1RHM8_LEGLO_3_265	100

Sequence based PCA Plot of the family - PF09520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay