3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09519

Details:

PFam ID : PF09519

PFam Domain Description : HindVP restriction endonuclease

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 24

Average sequence length: 248.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09519	A8YK21_MICAE_4_192	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09519	B0LX59_GEOSE_23_365	100

Sequence based PCA Plot of the family - PF09519 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=11
Motif2 Start=204 Length=8
Motif3 Start=325 Length=8
Motif4 Start=220 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay